Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs16854051 chr4:42123892 A/G 1.88E-5 258 18.4 32.78 33.95 KM Plot
SARC rs16902863 chr8:129415706 T/G 1.99E-13 257 33.95 23.17 3.97 KM Plot
SARC rs16902889 chr8:129424715 G/C 1.74E-13 258 33.9 23.17 3.97 KM Plot
SARC rs16902895 chr8:129425593 A/G 1.74E-13 258 33.9 23.17 3.97 KM Plot
SARC rs16929655 chr12:26083873 G/A 2.89E-6 256 33.9 27.25 16.17 KM Plot
SARC rs16929667 chr12:26088424 C/G 9.42E-8 258 33.55 29.9 13.57 KM Plot
SARC rs16939689 chr16:85813740 A/C 0 258 32.5 27.1 1.07 KM Plot
SARC rs16962098 chr13:104004001 A/G 0 258 1.07 35.77 31.02 KM Plot
SARC rs16970052 chr15:40251932 C/T 3.2E-6 258 17.1 32.6 32.78 KM Plot
SARC rs17008537 chr4:164639989 G/T 2.42E-14 258 1.17 27.1 32.5 KM Plot
SARC rs17052727 chr3:53070914 T/C 1.04E-5 257 31.78 34.57 3.1 KM Plot
SARC rs17058346 chr13:39195569 A/G 7.53E-6 258 10.67 35.57 30.93 KM Plot
SARC rs17075341 chr4:185064237 C/T 3.38E-14 258 31.77 32.4 1.17 KM Plot
SARC rs17088876 chr18:71823296 A/G 2.07E-5 256 31.98 31.97 6.43 KM Plot
SARC rs17088882 chr18:71825961 A/G 2.1E-5 255 31.57 31.97 6.43 KM Plot